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If you must download individual files from a project, you typically use the Files page. However, if you have too many files to manage from the application, you can use a CLI command: domino download-results. This command accepts a filter that allows you to download a subset of the project. Run the following to see documentation of this command: 
domino help download-results
As an example, you can download the contents of a folder with a command like this: 
domino download-results --filter 'myfolder/*' 548fda01e4b0a8f06b7e8d99
  • The --filter option is what limits the downloaded files to the pattern that follows it
  • 548fda01e4b0a8f06b7e8d99 is the run ID
You can also use a run number instead of an ID: 
domino download-results --filter 'myfolder/*' 1
This downloads the output files from a run, so you must have submitted at least one run in the project. Files are listed in the local directory under results/run-<runId or runNumber>.